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Introduction to the Python programming language
Why Python?
Using Python to deal with biological data
Working with the iPython shell
Your first programme
Writing Python scripts
Importing modules
Working with protein and RNA/DNA sequences
Finding motives
Transcription and translation in silico
Handling sequence alignments
Parsing data in different biological formats
Parsing FASTA
Data format conversions
Running biological analyses
BLAST
Accessing biological web services
Dealing with biological 3D structures using Python
Python facilitates statistical analysis
Visualizing data
Creating bar and scatter plots
Calculating an Area Under Curve (AUC)
Working with .xls and .csv files
Importing data from and exporting to MS Excel / OpenOffice Calc
Writing .xls and .csv files
Using Python to create an automated data processing pipeline